An adjacency list is a list of numeric vectors, containing the neighbor vertices for each vertex. This function creates an igraph graph object from such a list.
Usage
graph_from_adj_list(
adjlist,
mode = c("out", "in", "all", "total"),
duplicate = TRUE
)
Arguments
- adjlist
The adjacency list. It should be consistent, i.e. the maximum throughout all vectors in the list must be less than the number of vectors (=the number of vertices in the graph).
- mode
Character scalar, it specifies whether the graph to create is undirected (‘all’ or ‘total’) or directed; and in the latter case, whether it contains the outgoing (‘out’) or the incoming (‘in’) neighbors of the vertices.
- duplicate
Logical scalar. For undirected graphs it gives whether edges are included in the list twice. E.g. if it is
TRUE
then for an undirected{A,B}
edgegraph_from_adj_list()
expectsA
included in the neighbors ofB
andB
to be included in the neighbors ofA
.This argument is ignored if
mode
isout
orin
.
Details
Adjacency lists are handy if you intend to do many (small) modifications to a graph. In this case adjacency lists are more efficient than igraph graphs.
The idea is that you convert your graph to an adjacency list by
as_adj_list()
, do your modifications to the graphs and finally
create again an igraph graph by calling graph_from_adj_list()
.
See also
Other conversion:
as.directed()
,
as.matrix.igraph()
,
as_adj_list()
,
as_adjacency_matrix()
,
as_biadjacency_matrix()
,
as_data_frame()
,
as_edgelist()
,
as_graphnel()
,
as_long_data_frame()
,
graph_from_graphnel()
Author
Gabor Csardi csardi.gabor@gmail.com
Examples
## Directed
g <- make_ring(10, directed = TRUE)
al <- as_adj_list(g, mode = "out")
g2 <- graph_from_adj_list(al)
graph.isomorphic(g, g2)
#> [1] TRUE
## Undirected
g <- make_ring(10)
al <- as_adj_list(g)
g2 <- graph_from_adj_list(al, mode = "all")
graph.isomorphic(g, g2)
#> [1] TRUE
ecount(g2)
#> [1] 10
g3 <- graph_from_adj_list(al, mode = "all", duplicate = FALSE)
ecount(g3)
#> [1] 20
which_multiple(g3)
#> [1] FALSE FALSE TRUE FALSE TRUE FALSE TRUE FALSE TRUE FALSE TRUE FALSE
#> [13] TRUE FALSE TRUE FALSE TRUE FALSE TRUE TRUE